Someone asked this question years ago (http://forum.bytesforall.com/showthr...ghlight=disqus) but it seems like it hasn't been solved.
I'm using Wordpress 3.4.1 and Atahuapla 3.7.7 with Disqus commenting system (this is my site: http://www.cognitionetc.com). %comments in the post info footer doesn't go to the Disqus comments, and it doesn't display the number of comments. Even with several comments, the post info just displays "Leave a comment", and when that is clicked on it goes to ../pageurl/#respond, e.g. http://www.cognitionetc.com/2012/07/...ative/#respond which doesn't go to the comment area, just the post page itself.
I can't for the life of me work out how to fix this. Any ideas?