There have been coding changes so to get this to work do the following. Edit bfa_header_config.php and fine lines 44-45 (version 3.4.9) which should be
HTML Code:
echo bfa_hor_pages($bfa_ata['sorting_page_menu_bar'], $bfa_ata['levels_page_menu_bar'],
$bfa_ata['titles_page_menu_bar'], $bfa_ata['exclude_page_menu_bar']);
add the following after line 45
HTML Code:
echo bfa_hor_cats($bfa_ata['sorting_cat_menu_bar'], $bfa_ata['order_cat_menu_bar'],
$bfa_ata['levels_cat_menu_bar'], $bfa_ata['titles_cat_menu_bar'], $bfa_ata['exclude_cat_menu_bar']);
This will cause the use of the %pages, %page-center or %page-right to display the Category menu items after the page menu items