This is the site I'm working on. I want to move the search box so that it's under the top logo image. Any help would be much appreciated!

the order of the way things show in the header is set at ATO->Header->Configure Header Area

I do see that. However, I'm already using the %logo to display the top logo graphic, which span the width of the main container. If I choose to display the search box in the same "configure header" menu area, the search box shows up waaayyy off to the right, in the background. I want it to show up under the logo image but still in the main container area. I hope that makes sense It'd be cool to have the search box display as its own parameter in the configure admin menu.

Help?

You can add a widget area to the header and then place the search widget in that widget area, in 3.4.2