well that tells me that this isn't a theme issue. I assume you mean the 'Link' button when you are at dashboard->post-> Add Post. On my site with 3.1 it works fine, I hi-lite some text,press the 'Link' tab and up pops up a window to create the link. I put in the link, press ok and the link is there.
This looks like a WordPress/environmental issue at your host. You should check the error logs and call your hosts support team. You might check the WordPress.org support forum too.
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