I believe that this is a theme error - if wordpress is not installed in the root directory, then the theme does not find jquery.js. I can go poking around to find out where this happens, but I'm wondering if this is something that can be fixed generically.

thanks

the problem appears to be in the following code:

<script type="text/javascript" src="<?php echo $bfa_ata['get_option_home']; ?>/wp-includes/js/jquery/jquery.js?ver=1.2.6"></script>


apparently $bfa_ata['get_option_home'] is not returning the wordpress home, but the root directory.

You're right, this should be (and is, in 3.4.2) replaced with $bfa_ata['siteurl']