ATO not working - 2 sites one works one does not

Hi,
I am have two sites and I am using Atahualpa on both.
ATO page loads and the left side bar is visible and I can click on it but the Atahualpa options bar is visible but if I click on anything it does not work. The text area is blank.
I copied the source code of ATO for the one that is working and for the one that is not working and this is the difference.

Working
<form action="" method="" id="widgetarea-form">
<input type="checkbox" name="delete_widget_areas" id="" value="" /><label class="widget_area_label" for=""></label><br /></form>

Not working
<form action="" method="" id="widgetarea-form"></form>


I checked the edit area and

<input type="checkbox" name="delete_widget_areas" id="" value="" /><label class="widget_area_label" for=""></label><br />

is there but it is not loading. What would be causing it not to load.