I'm very new to all this and love the theme.
However
1. the menu that appears on my site is not in the order that is shown under Appearance/Menus.
2. there is also a problem with Events Calendar, where event categories aren't appearing.
I have been using theme Living Journal and had none of these problems.

what is teh url?
in appearances->menu did you specify the theme location? (top left box) if you didn't then Atahualpa is automatically building your menu based on the theme menu settings.

which 'events calendar' are you using - I know of one which hasn't been updated in a couple years.

Thanks - but I've just discovered the answer - I had to go to Appearance - Menus- Menu 1 and enter the name of the menu (even though I only have one!) and then all is fine. It was left blank in default.