First time post... not sure if this is really silly, but I made this little fix and thought I would share just in case anyone else needs it... it's probably already done somewhere but I couldn't find it, so...
bfa_new_wp3_menus.php
PHP Code:
function bfa_new_wp3_menus(...) {
...
wp_nav_menu( array(
'theme_location' => $theme_location,
'container' => 'div',
'container_id' => $theme_location,
'menu_class' => $menu_class,
'menu_id' => $menu_id,
'link_before' => '<span>',
'link_after' => '</span>',
'depth' => $bfa_ata['levels_page_menu_bar'] //<<<<<<<<<<<<<< ADDED THIS
) );
...
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