I've been using a plugin called Shortcode Manager (aka Shortbus after it's been installed) for managing added code. For example, for CSS, in ATA theme options I enter
<?php echo do_shortcode('[sb name="CSS"]'); ?>
and then write out the CSS in the shortcode plugin. I do this because I find it's a little quicker when saving and flipping through different code sections.
My issue is, I'd also like to do this in the header area but then I can't use the ATA shortcodes, like %pages or %logo, because I guess it's not processed at the right times in order to use those. Anybody know if what I'm trying to do is possible? By the way, I'm using ATA 3.6.4. Thanks.